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Publish your computer code: it is good enough

posted by Adam Webb on 14 Oct 2010 - 11:52

Article in Nature:

That the code is a little raw is one of the main reasons scientists give for not sharing it with others. Yet, software in all trades is written to be good enough for the job intended. So if your code is good enough to do the job, then it is good enough to release — and releasing it will help your research and your field.
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Federated identity "mashup" demo, using multiple protocols for signing up and participating in a medical device trial

posted by Gudmundur A Thorisson on 12 Aug 2010 - 11:44

I came across this interesting identity "mashup" demo, after seeing it highlighted by Kim Cameron on his Identity Blog last month. From the original post on the Microsoft Developer network:

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New group for the Bio-resource Impact Factor project

posted by Gudmundur A Thorisson on 12 Aug 2010 - 10:43

Our partners in GEN2PHEN at INSERM have just launched a new community group on the Knowledge Centre:

BRIF - Bio-resource Impact Factor - http://www.gen2phen.org/groups/brif-bio-resource-impact-factor

[..]The idea is to construct a quantitative parameter to describe the use of bioresources, modeled on the publication ‘Impact Factor’. Such a BRIF would make it possible to document; 1. the quantitative use of a Bio-Resource, 2. the quality and the importance of research results involving it, and 3. the scientific and management efforts of those who set up and made available a valid bioresource and their institution.[..]

Clearly, researcher identity will play a key role in this work for identifying contributors (as  discussed previously on this site).

Gabrielle Bertier has added posted several interesting topics and questions to the group for discussion, e.g. which type of persistent identifer that would be suitable and the issue of standardizing citations of bio-resources in the literature.

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The delay in sharing research data is costing lives

posted by Gudmundur A Thorisson on 2 Aug 2010 - 17:23

Sommer, J. The delay in sharing research data is costing lives. Nat Med (2010) vol. 16 (7) pp. 744. doi:10.1038/nm0710-744

It is not uncommon for potentially life-saving research data to be published years after being generated. But the setback to progress caused by the delay in releasing data is troublesome for people who selflessly participate in trials and desperately await new therapies. Scientists need to feel greater urgency to share their findings quickly, and they need additional avenues to facilitate this process.

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Semantic Web, the World Cup, and the BBC

posted by Adam Webb on 14 Jul 2010 - 12:17
Here's an interesting post that's appeared on the BBC's Internet Blog exploring the use of semantic web technologies in powering their (rather substantial) World Cup site. It's a fairly technical document casually dropping the semantic web monkey's favourite buzzwords and acronyms (RDF triples, metadata, ontologies, XML, SPARQL), but it serves as an excellent and easily followed demonstration of the power semantic web technologies can provide on a large scale, highly-exposed platform.
1 comments | Read more...


ORCID or how to build a unique identifier for scientists in 10 easy steps

posted by Gudmundur A Thorisson on 1 Feb 2010 - 13:02

Martin Fenner put up an informative blog post on Nature Network recently, summarising his ideas for the way forward on the author ID front: 

http://network.nature.com/people/mfenner/blog/2010/01/03/orcid-or-how-to-build-a-unique-identifier-for-scientists-in-10-easy-steps

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A Quick Guide for Developing Effective Bioinformatics Programming Skills

posted by Adam Webb on 4 Jan 2010 - 13:41

Interesting article in PLoS Computational Biology:

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CrossRef joins ORCID initiative: Open Researcher & Contributor ID finally in sight

posted by Gudmundur A Thorisson on 14 Dec 2009 - 13:05

Excellent news on the researcher/contributor ID front!

From http://www.crossref.org/01company/orcid.html

CrossRef is pleased to announce that it will be participating in the recently launched Open Researcher and Contributor ID (ORCID) initiative to create an unambiguous identifier for scholarly and professional researchers. Our members will be aware that CrossRef has been exploring the possibility of creating an “author DOI” or “contributor ID” system. In doing so, it has become clear that the issues and use-cases involved in identifying researchers span a broad collection of stakeholders including libraries, institutions, funders, publishers and, of course researchers themselves. In short, this is not primarily “a publisher problem.” As such, we believe that the ORCID approach to creating an inclusive and open organization representing all the stakeholders in the scholarly communications process represents the best chance of creating a successful contributor identification system

Discussion on FriendFeed: http://ff.im/cOhuY

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Letter to Darwin

posted by Gudmundur A Thorisson on 22 Oct 2009 - 15:53

Funny, tongue-in-cheek editorial in EMBO reports January that I just came across:

EMBO reports (2009) 10, 1 doi:10.1038/embor.2008.239

Dear Dr Darwin,

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The Venn of identity - cont.

posted by Gudmundur A Thorisson on 11 Oct 2009 - 20:53

Continuing the Venn theme from my previous post - a colleague also pointed this paper out to me:

Maler and Reed. The Venn of Identity: Options and Issues in Federated Identity Management. Security & Privacy, IEEE (2008) vol. 6 (2) http://dx.doi.org/10.1109/MSP.2008.50

 

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