WP4 - Genetics G2P Databases
WP Resources
| Title | Work Package | Lead benneficiary | Dissemination level | Due delivery date | |
|---|---|---|---|---|---|
| D4.1 - User-Manual for LSDB-in-a-box V1 Software | WP4 | LUMC | Public | Jun 2009 | |
| D4.1 - User-Manual for LSDB-in-a-box V1 Software | WP4 | LUMC | Public | Jun 2009 | |
| D4.1 - User-Manual for LSDB-in-a-box V1 Software | WP4 | LUMC | Public | Jun 2009 | |
| D4.2 - Graphical Software for the Presentation of LSDB Data | WP4 | LUMC | Public | Dec 2009 | |
| D4.3 - A Validated Code-Base for Checking Mutation Nomenclature | WP4 | LUMC | Public | Dec 2009 | |
| D4.4 - Foundational LSDBs for all disease-related genes | WP4 | LUMC | Public | Jun 2010 |
| Title | Work Package | Lead benneficiary | Dissemination level | Due delivery date | |
|---|---|---|---|---|---|
| D4.5 - User Manual for a Stand-Alone Application for Checking Mutation Nomenclature | WP4 | LUMC | Public | Dec 2012 | |
| D4.6 - Software for Automated Molecular Diagnostic Data Integration | WP4 | LUMC | Public | Dec 2012 | |
| D4.7 - User-Manual for LSDB-in-a-box V2 Software | WP4 | LUMC | Public | Dec 2012 |
| Title | Work Package | Resource Type |
Post date |
|
|---|---|---|---|---|
 |
D4.4 Foundational LSDBs for all disease-related genes | WP4 | Deliverable | 12 Aug 2010 - 11:12 |
 |
LSDB object model | WP3, WP4 | 3 May 2010 - 13:40 | |
 |
LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format | WP3, WP4 | 4 Dec 2009 - 14:18 | |
|
|
Development of LOVD RESTful / Atom webservice | WP4 | 1 Oct 2009 - 09:21 | |
|
|
D4.1 User-Manual for LSDB-in-a-box V1 Software | WP4 | Deliverable | 19 Aug 2009 - 10:57 |
|
|
LOVD 2.0 MANUAL | WP4 | Deliverable | 15 Jul 2009 - 14:47 |
|
|
UMD manual - May 2009 version | WP4 | Deliverable | 15 Jul 2009 - 14:42 |
|
|
Web Service Interfaces to LSDBs - Browser Point of View | WP3, WP4, WP6, WP7 | Other | 29 May 2009 - 13:26 |
|
|
Web services and exchange formats wiki | WP3, WP4, WP6, WP7 | 29 Apr 2009 - 22:36 |
Description
These two related work packages (WP4 and WP5) will create modular and generic G2P database components, and then use these ‘building blocks’ to construct major demonstration databases for use by the field. All of this work will be based upon the standards developed in WP3. The main distinction between these two work packages is that WP4 will concentrate upon genetics databases (i.e., where the focus is on one or a few genes or diseases, with clinical utility being most important) whereas WP5 will concentrate upon summary level genomics databases (i.e., aggregated datasets, where there is no focus on any particular gene or disease, and with research utility being most important). The two workpackages will implement rather different user interfaces, with WP4 oriented mostly towards the needs of clinical users and WP5 oriented more towards biomedical researchers. WP4 and WP5 are therefore complementary, and will benefit from close co-operation as their respective tools and software solutions are developed. Furthermore, in both cases, the database components and/or complete databases produced will be used as tangible assets around which federated teams of (existing and new) database operators can grow, and this will be actively encouraged by activities in these work packages. WP4 and WP5 involve substantial technology development, and, as such, will be subject to quality assurance measures dictated by WP1. Both work packages will generate operational databases, and these will be used for the data gathering efforts performed in WP7. These databases will also be valuable in their own right, and in that capacity they represent example depositories that will be integrated and made universally searchable by the activities of WP6.