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See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://askja.gene.le.ac.uk/drupal5/content/lsdb-minimal-requirements This list is a mapping between the LSDB minimal data requirements ...

Post - Ivo F.A.C. Fokkema - 2 Jul 2010 - 04:34 - 16 comments - 0 attachments - 0 groups

Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...

Post - Juha Muilu - 25 Nov 2009 - 10:35 - 25 comments - 0 attachments - 1 group

(updated 2009-10-22; includes gene listing and some updates to the output format) (updated 2009-12-27; described new additions and genomic locations) (updated 2010-02-15; described new additions and world-wide LOVD querying service) (updated 2010-0 ...

Post - Ivo F.A.C. Fokkema - 20 Apr 2010 - 12:16 - 8 comments - 0 attachments - 1 group

In recent years a battle-of-sorts has been raging in Web developer circles between proponents of two main web service architecture styles:  Simple Object Access Protocol (SOAP) on one hand and  REpresentional State Transfer (REST) on the ...

Post - Gudmundur A Thorisson - 25 Nov 2009 - 13:59 - 6 comments - 0 attachments - 1 group

More information: http://www.gen2phen.org/post/lsdb-xml-schema#comment-365 http://www.gen2phen.org/wiki/lsdb-xml-version-12 http://www.gen2phen.org/wiki/lsdb-xml-airebase-example https://svn.gene.le.ac.uk/gen2phen/trunk/data_formats ...

Post - Juha Muilu - 10 May 2010 - 09:39 - 0 comments - 0 attachments - 1 group

This post, something of a sequel to my previous post on REST vs SOAP , discusses how web feeds (aka RSS or 'syndicated' feeds) and related Web technologies can potentially be used for a variety of G2P databasing tasks, both to enhance the overall Web ...

Post - Gudmundur A Thorisson - 10 Feb 2010 - 12:40 - 1 comment - 0 attachments - 1 group

Hi everyone! We have just launched WAVe: http://bioinformatics.ua.pt/WAVe/ ! I know this is not exactly semantic web related, but I believe it is the beginning of something in this matter. In any case, it is an initial attempt to kick-off the dev ...

Post - Pedro Lopes - 22 Apr 2010 - 10:48 - 0 comments - 0 attachments - 1 group

Semantic Web developments are gaining momentum in the scientific research community: the usage of semantics is finally being considered as a valuable solution to integrate resources and compose services. The Semantic Web can be seen as a set of new ...

Post - Pedro Lopes - 25 Feb 2010 - 11:54 - 0 comments - 0 attachments - 1 group

  Do we need data exchange format for summary data also? I compiled  check list  from Engage meta study to start with. Please have a look at it and feel free to add more attributes. The chklist is based on meta-studies and HGVBaseG ...

Post - Juha Muilu - 25 Nov 2009 - 13:24 - 2 comments - 1 attachment - 1 group

Interesting article on InfoQ , showcasing how one can build workflows with RESTful web services, using a customer ordering coffee at a Starbucks as a model: Jim Webber, Savas Parastatidis & Ian Robinson. How to GET a Cup of Coffee. Published o ...

Post - Gudmundur A Thorisson - 25 Nov 2009 - 14:13 - 2 comments - 0 attachments - 1 group