Search: Post, Web services and exchange formats
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- Exchange format for LSDBs
Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...
Post - Juha Muilu - 25 Nov 2009 - 09:35 - 25 comments - 0 attachments - 1 group
- LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format
See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://www.gen2phen.org/post/lsdb-minimal-requirements-johan-discussion-... See also other LSDB/G2P check list This list is a ma ...
Post - Ivo F.A.C. Fokkema - 4 Feb 2011 - 12:37 - 16 comments - 0 attachments - 1 group
- Development of LOVD RESTful / Atom webservice
(updated 2009-10-22; includes gene listing and some updates to the output format) (updated 2009-12-27; described new additions and genomic locations) (updated 2010-02-15; described new additions and world-wide LOVD querying service) (updated 2010-0 ...
Post - Ivo F.A.C. Fokkema - 20 Apr 2010 - 11:16 - 8 comments - 0 attachments - 1 group
- Web service architecture: simple REST vs complex SOAP
In recent years a battle-of-sorts has been raging in Web developer circles between proponents of two main web service architecture styles: Simple Object Access Protocol (SOAP) on one hand and REpresentional State Transfer (REST) on the ...
Post - Gudmundur A Thorisson - 25 Nov 2009 - 12:59 - 6 comments - 0 attachments - 1 group
- Data format for summary level GWAS data
Do we need data exchange format for summary data also? I compiled check list from Engage meta study to start with. Please have a look at it and feel free to add more attributes. The chklist is based on meta-studies and HGVBaseG ...
Post - Juha Muilu - 25 Nov 2009 - 12:24 - 2 comments - 1 attachment - 1 group
- How to GET a Cup of Coffee:
Interesting article on InfoQ , showcasing how one can build workflows with RESTful web services, using a customer ordering coffee at a Starbucks as a model: Jim Webber, Savas Parastatidis & Ian Robinson. How to GET a Cup of Coffee. Published o ...
Post - Gudmundur A Thorisson - 25 Nov 2009 - 13:13 - 2 comments - 0 attachments - 1 group
- Findis Prototype Web Service
I made a prototype web service for the findis national mutation database using rest protocol. The db is rather small ~1000 or so mutations from 37 genes. Service is implemented on Java using the RESTeasy framework. Source code ...
Post - Juha Muilu - 25 Nov 2009 - 12:51 - 2 comments - 0 attachments - 1 group
- Atom web feeds, the AtomPub protocol and G2P databases
This post, something of a sequel to my previous post on REST vs SOAP , discusses how web feeds (aka RSS or 'syndicated' feeds) and related Web technologies can potentially be used for a variety of G2P databasing tasks, both to enhance the overall Web ...
Post - Gudmundur A Thorisson - 10 Feb 2010 - 11:40 - 1 comment - 0 attachments - 1 group
- New variation XML version (v1.2) is made available
More information: http://www.gen2phen.org/post/lsdb-xml-schema#comment-365 http://www.gen2phen.org/wiki/lsdb-xml-version-12 http://www.gen2phen.org/wiki/lsdb-xml-airebase-example https://svn.gene.le.ac.uk/gen2phen/trunk/data_formats ...
Post - Juha Muilu - 10 May 2010 - 08:39 - 0 comments - 0 attachments - 1 group
- Exchange format
I like Glen's practical xml format for the variation data. The version made from the workshop model was just an attempt to directly capture info from the model and it was getting too... complex. There is a need to annotate variants based on ref ...
Post - Juha Muilu - 25 Nov 2009 - 13:12 - 0 comments - 0 attachments - 1 group