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Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...

Post - Juha Muilu - 25 Nov 2009 - 09:35 - 25 comments - 0 attachments - 1 group

See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://www.gen2phen.org/post/lsdb-minimal-requirements-johan-discussion-... See also other LSDB/G2P check list This list is a ma ...

Post - Ivo F.A.C. Fokkema - 4 Feb 2011 - 12:37 - 16 comments - 0 attachments - 1 group

I made a prototype web service for the findis  national mutation database using rest protocol. The db is rather small ~1000 or so mutations from 37 genes. Service is implemented on Java using the  RESTeasy  framework. Source code ...

Post - Juha Muilu - 25 Nov 2009 - 12:51 - 2 comments - 0 attachments - 1 group

During my Leicester stay I did a deep analysis on the integration of D2R in Molgenis, which resulted in a short report. This report highlights D2R setup and details some custom enhancements that should be added to D2R mappings in order to create a riche ...

Post - Pedro Lopes - 21 Oct 2010 - 21:53 - 0 comments - 3 attachments - 1 group

More information: http://www.gen2phen.org/post/lsdb-xml-schema#comment-365 http://www.gen2phen.org/wiki/lsdb-xml-version-12 http://www.gen2phen.org/wiki/lsdb-xml-airebase-example https://svn.gene.le.ac.uk/gen2phen/trunk/data_formats ...

Post - Juha Muilu - 10 May 2010 - 08:39 - 0 comments - 0 attachments - 1 group

I like Glen's practical xml format for the variation data.  The version made from the workshop model was just an attempt to directly capture info from the model and it was getting too... complex. There is a need to annotate variants based on ref ...

Post - Juha Muilu - 25 Nov 2009 - 13:12 - 0 comments - 0 attachments - 1 group