Search: Wiki Page, Functional Prediction
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- Tools predicting the overal functional consequences of SNPs
This category collects together programs which evaluate the overall functional effects of SNPs. These programs commonly evaluate all the following things: intronic, 5'UTR, 3'UTR, 5-upstream. 3-downstream, splicing site and coding (synonymous or ...
Wiki Page - Päivi Rosenström - 12 Jul 2011 - 06:08 - 0 comments - 0 attachments - 1 group
- Protein level predictions 1 - Pathogenic or not predictors
This site collects together tools which predict whether the mutation changing the amino acid of the protein is considered to increase disease susceptibility or considered to be benign. Contents Programs avai ...
Wiki Page - Päivi Rosenström - 6 Oct 2010 - 15:18 - 0 comments - 0 attachments - 1 group
- Tools and methods for mapping genomic structural variation
This page concentrates on tools and methods for mapping genomic structural variation. Specific to new sequencing techniques is the unprecedented speed and short read lenghts. The new tools mapping the genomic structural variation are design ...
Wiki Page - Päivi Rosenström - 6 Oct 2010 - 15:03 - 0 comments - 0 attachments - 1 group
- SNP identification and annotation tools
This section collects together tools that help identifying and annotation of SNPs. In addition some of them can be used to map SNPs to genes. Contents Programs available Description of programs Us ...
Wiki Page - Päivi Rosenström - 6 Oct 2010 - 13:59 - 0 comments - 0 attachments - 1 group
- Meta tools
Meta tools are tools which combine the analysis of several other prediction tools. Benefit of this is that the weaknesses of one program can be compensated by others and therefore the result is expected to be more reliable than obtained by individual pr ...
Wiki Page - Päivi Rosenström - 29 Sep 2010 - 10:34 - 0 comments - 0 attachments - 1 group
- Protein level predictions 8 - Other tools predicting protein functional changes
[Description of the tool set| Contents Programs available Description of programs Useful databases Review articles Other articles Useful links ...
Wiki Page - Päivi Rosenström - 28 Sep 2010 - 07:19 - 0 comments - 0 attachments - 1 group
- Tools predicting problems in mRNA splicing
Pre-messenger RNA (pre-mRNA) splicing defects are likely to have an impact on clinical practice as these seem to have a role in almost all known diseases with genetic aetiology (Tazi et al. 2009). It is likely that approximately 15 % of ...
Wiki Page - Päivi Rosenström - 22 Sep 2010 - 08:29 - 0 comments - 0 attachments - 1 group
- Prediction tools
Contents Tools predicting effect of protein level changes Meta tools Tools predicting effects of problems in mRNA splicing Tools considering epistatic effects T ...
Wiki Page - Päivi Rosenström - 22 Sep 2010 - 08:27 - 0 comments - 0 attachments - 1 group
- Tools considering epistatic effects
Epistatic interactions of SNPs are believed to be very important in determining individual susceptibility to complex diseases. Multiple genetic variations may show little effect individually but strong interactions jointly which is ...
Wiki Page - Päivi Rosenström - 16 Sep 2010 - 10:01 - 0 comments - 0 attachments - 1 group
- Protein level predictions 4 - Stability changes prediction
Changes in the stability of the protein as a result of the mutation is one important factors considered to predict the mutations ability to increase disease susceptibility. This subgroup of programs contains tools predicting whether the mutation has an ...
Wiki Page - Päivi Rosenström - 19 Aug 2010 - 08:24 - 0 comments - 0 attachments - 1 group