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Background Web-services and exchange formats wiki Standards in gen2phen Implementation RelaxNG compact and XSD schema files  and examples from the svn Documentation  (see also examples). New do ...

Wiki Page - Juha Muilu - 20 Jun 2010 - 07:28 - 25 comments - 0 attachments - 0 groups

Misc Evidence codes GO Evidence codes Mutation events   Types of mutation events and their discreet affects on RNA and polypeptide Variant Consequence See for example sequence ontology :&n ...

Wiki Page - Juha Muilu - 28 Aug 2010 - 04:43 - 6 comments - 0 attachments - 0 groups

Conceptual model based on Helsinki workshop , workshop notes  and minimum information checklist Molgenis implementation Molgenis implementation for Findis national mutation database LSDB XML Implementation model &nbs ...

Wiki Page - Juha Muilu - 15 Jun 2010 - 11:28 - 0 comments - 0 attachments - 0 groups

UML tools and libraries ArgoUML  see also UML 2.x support OWL From UML  and OWL2XMI Eclipse modeling project MOSkitt TextUML - Text based UML editor for eclipse with graphviz integration XMI2 - A ...

Wiki Page - Juha Muilu - 14 Jun 2010 - 11:01 - 0 comments - 0 attachments - 0 groups

Banff Manifesto  and the cook book  (Bio2RDF) Modelling resources GRDDL Integrity constraints for OWL ( Where OWL fails, another OWL arises ) Making linked data reasonable using DL (WP3) ...

Wiki Page - Juha Muilu - 29 May 2010 - 07:45 - 0 comments - 0 attachments - 0 groups

Ontologies relevant to variation data Variation ontology - Variation Ontology, VariO , project aims at providing ontology for standardized, systematic description of effects and consequences of variations SO-Pharm is a formal onto ...

Wiki Page - Juha Muilu - 28 May 2010 - 16:34 - 0 comments - 0 attachments - 0 groups

Links LSDB data models (schemalet site) LSDB object model (the main site for LSDB object model developments) Consensus LSDB model (EBI and Helsinki workshops)  and Molgenis implementation PaGE-OM - Object model for Ph ...

Wiki Page - Juha Muilu - 3 May 2010 - 14:50 - 0 comments - 0 attachments - 0 groups

This wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardising access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualise and f ...

Wiki Page - Administrator - 18 Apr 2010 - 10:41 - 0 comments - 0 attachments - 1 group

Standards The wiki-page is starting point for data standards related activities in gen2phen Local links  Genotype data models Phenotype data models  wiki page and phenotype phenotype modeling discussion group LRG ...

Wiki Page - Juha Muilu - 18 Apr 2010 - 08:32 - 0 comments - 0 attachments - 0 groups

Table of Contents [ hide ] Introduction Problems Required Operations Implementation Issues This post discusses web service interfaces to Locus Specific Databases (LSDBs), from the speci ...

Wiki Page - Glen Dobson - 25 Nov 2009 - 11:00 - 4 comments - 0 attachments - 1 group