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- LSDB - Controlled vocabulary terms
Note: This is a working document. Final information will be collected into the VarioML wiki pages. Misc Evidence codes GO Evidence codes dbSNP validation codes for variants Evidence code ontology Muta ...
Wiki Page - Juha Muilu - 19 Jul 2011 - 10:36 - 6 comments - 0 attachments - 2 groups
- Modeling resources
UML tools and libraries ArgoUML see also UML 2.x support OWL From UML and OWL2XMI Eclipse modeling project MOSkitt TextUML - Text based UML editor for eclipse with graphviz integration XMI2 - A ...
Wiki Page - Juha Muilu - 26 Sep 2011 - 14:56 - 0 comments - 0 attachments - 0 groups
- Web services and exchange formats wiki
This wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardising access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualise a ...
Wiki Page - Administrator - 19 Jul 2011 - 08:46 - 0 comments - 0 attachments - 1 group
- Web Service Interfaces to LSDBs - Browser Point of View
Table of Contents [ hide ] Introduction Problems Required Operations Implementation Issues This post discusses web service interfaces to Locus Specific Databases (LSDBs), from the speci ...
Wiki Page - Glen Dobson - 25 Nov 2009 - 10:00 - 4 comments - 0 attachments - 1 group
- LSDB object model
Conceptual model based on Helsinki workshop , workshop notes and minimum information checklist Molgenis implementation Molgenis implementation for Findis national mutation database LSDB XML Implementation model &nbs ...
Wiki Page - Juha Muilu - 15 Jun 2010 - 10:28 - 0 comments - 0 attachments - 0 groups
- RDFization of exchange formats
Banff Manifesto and the cook book (Bio2RDF) Modelling resources GRDDL Integrity constraints for OWL ( Where OWL fails, another OWL arises ) Making linked data reasonable using DL (WP3) ...
Wiki Page - Juha Muilu - 29 May 2010 - 06:45 - 0 comments - 0 attachments - 0 groups
- Ontologies
Ontologies relevant to variation data Variation ontology - Variation Ontology, VariO , project aims at providing ontology for standardized, systematic description of effects and consequences of variations SO-Pharm is a formal onto ...
Wiki Page - Juha Muilu - 28 May 2010 - 15:34 - 0 comments - 0 attachments - 0 groups
- Genotype data models
Links LSDB data models (schemalet site) LSDB object model (the main site for LSDB object model developments) Consensus LSDB model (EBI and Helsinki workshops) and Molgenis implementation PaGE-OM - Object model for Ph ...
Wiki Page - Juha Muilu - 3 May 2010 - 13:50 - 0 comments - 0 attachments - 0 groups
- Standards
Standards The wiki-page is starting point for data standards related activities in gen2phen Local links Genotype data models Phenotype data models wiki page and phenotype phenotype modeling discussion group LRG ...
Wiki Page - Juha Muilu - 18 Apr 2010 - 07:32 - 0 comments - 0 attachments - 0 groups