Search: 2009

Background Web-services and exchange formats wiki Standards in gen2phen Implementation RelaxNG compact and XSD schema files  and examples from the svn Documentation  (see also examples). New do ...

Wiki Page - Juha Muilu - 20 Jun 2010 - 07:28 - 25 comments - 0 attachments - 0 groups

See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://askja.gene.le.ac.uk/drupal5/content/lsdb-minimal-requirements This list is a mapping between the LSDB minimal data requirements ...

Post - Ivo F.A.C. Fokkema - 2 Jul 2010 - 04:34 - 16 comments - 0 attachments - 0 groups

Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...

Post - Juha Muilu - 25 Nov 2009 - 10:35 - 25 comments - 0 attachments - 1 group

(updated 2009-10-22; includes gene listing and some updates to the output format) (updated 2009-12-27; described new additions and genomic locations) (updated 2010-02-15; described new additions and world-wide LOVD querying service) (updated 2010-0 ...

Post - Ivo F.A.C. Fokkema - 20 Apr 2010 - 12:16 - 8 comments - 0 attachments - 1 group

In recent years a battle-of-sorts has been raging in Web developer circles between proponents of two main web service architecture styles:  Simple Object Access Protocol (SOAP) on one hand and  REpresentional State Transfer (REST) on the ...

Post - Gudmundur A Thorisson - 25 Nov 2009 - 13:59 - 6 comments - 0 attachments - 1 group

At the National Genetics Reference Laboratory (NGRL), Manchester we are investigating the development of prototype web services to allow machine-to machine access to LOVD data. Here, I hope to provide an overview, and record some of the issues involved ...

Wiki Page - Glen Dobson - 25 Nov 2009 - 13:50 - 14 comments - 0 attachments - 1 group

This wiki aims to highlight the basic concepts of Cafe Rouge, logged in members of the group are able to edit these pages. Interested individuals are encouraged to join the group and actively participate with any discussions regarding the project. ...

Wiki Page - Owen Lancaster - 28 Jul 2010 - 16:00 - 0 comments - 0 attachments - 1 group

UML tools and libraries ArgoUML  see also UML 2.x support OWL From UML  and OWL2XMI Eclipse modeling project MOSkitt TextUML - Text based UML editor for eclipse with graphviz integration XMI2 - A ...

Wiki Page - Juha Muilu - 14 Jun 2010 - 11:01 - 0 comments - 0 attachments - 0 groups

Ontologies relevant to variation data Variation ontology - Variation Ontology, VariO , project aims at providing ontology for standardized, systematic description of effects and consequences of variations SO-Pharm is a formal onto ...

Wiki Page - Juha Muilu - 28 May 2010 - 16:34 - 0 comments - 0 attachments - 0 groups

This site collects together tools which predict whether the mutation changing the amino acid of the protein is considered to increase disease  susceptibility or considered to be benign.   Contents Programs avai ...

Wiki Page - Päivi Rosenström - 20 May 2010 - 16:05 - 0 comments - 0 attachments - 1 group