Search: 2009
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- Exchange format for LSDBs
Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...
Post - Juha Muilu - 25 Nov 2009 - 09:35 - 25 comments - 0 attachments - 1 group
- LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format
See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://www.gen2phen.org/post/lsdb-minimal-requirements-johan-discussion-... See also other LSDB/G2P check list This list is a ma ...
Post - Ivo F.A.C. Fokkema - 4 Feb 2011 - 12:37 - 16 comments - 0 attachments - 1 group
- Developing Prototype LOVD web services at NGRL
At the National Genetics Reference Laboratory (NGRL), Manchester we are investigating the development of prototype web services to allow machine-to machine access to LOVD data. Here, I hope to provide an overview, and record some of the issues involved ...
Wiki Page - Glen Dobson - 25 Nov 2009 - 12:50 - 14 comments - 0 attachments - 1 group
- Cafe Variome Development
Description: Working group for Cafe Variome and KC integration C a f e Variome , is a central Internet depot or 'clearinghouse' for mutation data. The aim of the Cafe is to facilitate publication of data from diagn ...
Public group - Adam Webb - 27 Oct 2011 - 09:50 - 0 comments - 0 groups
- Modeling resources
UML tools and libraries ArgoUML see also UML 2.x support OWL From UML and OWL2XMI Eclipse modeling project MOSkitt TextUML - Text based UML editor for eclipse with graphviz integration XMI2 - A ...
Wiki Page - Juha Muilu - 26 Sep 2011 - 14:56 - 0 comments - 0 attachments - 0 groups
- Cafe Variome Architecture
Cafe Variome is built upon standard Web protocols and components. At the heart of Cafe Variome lies an Atom Store database (using AtomServer ), which is used to store mutation entries as they are submitted to the Cafe: A web feed is a simple XML ...
Wiki Page - Owen Lancaster - 15 Apr 2011 - 15:25 - 4 comments - 0 attachments - 1 group
- Development of LOVD RESTful / Atom webservice
(updated 2009-10-22; includes gene listing and some updates to the output format) (updated 2009-12-27; described new additions and genomic locations) (updated 2010-02-15; described new additions and world-wide LOVD querying service) (updated 2010-0 ...
Post - Ivo F.A.C. Fokkema - 20 Apr 2010 - 11:16 - 8 comments - 0 attachments - 1 group
- Web service architecture: simple REST vs complex SOAP
In recent years a battle-of-sorts has been raging in Web developer circles between proponents of two main web service architecture styles: Simple Object Access Protocol (SOAP) on one hand and REpresentional State Transfer (REST) on the ...
Post - Gudmundur A Thorisson - 25 Nov 2009 - 12:59 - 6 comments - 0 attachments - 1 group
- Web services and exchange formats wiki
This wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardising access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualise a ...
Wiki Page - Administrator - 19 Jul 2011 - 08:46 - 0 comments - 0 attachments - 1 group
- Describing complex sequence variants by extending HGVS
Dissemination number: 188 Taschner P E M, den Dunnen J T. Describing complex sequence variants by extending HGVS sequence variation nomenclature. Abstract. ISMB Confere ...
Dissemination Activity - Acacia Reiche - 14 Jul 2011 - 16:01 - 0 comments - 0 attachments - 0 groups