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- Exchange format for LSDBs
Hi All We have been discussing with Ivo about the data format and getting into following proposal: - Use xml-elemnts and not attributes, due to extendability etc. - Add separate elements for variation aliases and sequence changes. The latter one ...
Post - Juha Muilu - 25 Nov 2009 - 09:35 - 25 comments - 0 attachments - 1 group
- LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format
See the current XML format: http://www.gen2phen.org/wiki/lsdb-xml-data-format and workshop notes: http://www.gen2phen.org/post/lsdb-minimal-requirements-johan-discussion-... See also other LSDB/G2P check list This list is a ma ...
Post - Ivo F.A.C. Fokkema - 4 Feb 2011 - 12:37 - 16 comments - 0 attachments - 1 group
- LSDB - Controlled vocabulary terms
Note: This is a working document. Final information will be collected into the VarioML wiki pages. Misc Evidence codes GO Evidence codes dbSNP validation codes for variants Evidence code ontology Muta ...
Wiki Page - Juha Muilu - 19 Jul 2011 - 10:36 - 6 comments - 0 attachments - 2 groups
- VarioML notes
Notes for the VarioML documentATION TODOs Indentification of submittor (source id). We should have separate registry of data submittors (LSDBs) Have standard way to reference different databases in db_xrefs and ontology terms. For e ...
Wiki Page - Juha Muilu - 18 Oct 2011 - 09:50 - 2 comments - 0 attachments - 2 groups
- Developing Prototype LOVD web services at NGRL
At the National Genetics Reference Laboratory (NGRL), Manchester we are investigating the development of prototype web services to allow machine-to machine access to LOVD data. Here, I hope to provide an overview, and record some of the issues involved ...
Wiki Page - Glen Dobson - 25 Nov 2009 - 12:50 - 14 comments - 0 attachments - 1 group
- Data content specifications
Data Content specifications User contributed information and examples. Please check the VarioML website and GITHub for the latest information. After various iterations we ae planning to provide content spesifications in the SKOS ...
Wiki Page - Juha Muilu - 4 Nov 2011 - 09:45 - 0 comments - 0 attachments - 2 groups
- Development of LOVD RESTful / Atom webservice
(updated 2009-10-22; includes gene listing and some updates to the output format) (updated 2009-12-27; described new additions and genomic locations) (updated 2010-02-15; described new additions and world-wide LOVD querying service) (updated 2010-0 ...
Post - Ivo F.A.C. Fokkema - 20 Apr 2010 - 11:16 - 8 comments - 0 attachments - 1 group
- Web service architecture: simple REST vs complex SOAP
In recent years a battle-of-sorts has been raging in Web developer circles between proponents of two main web service architecture styles: Simple Object Access Protocol (SOAP) on one hand and REpresentional State Transfer (REST) on the ...
Post - Gudmundur A Thorisson - 25 Nov 2009 - 12:59 - 6 comments - 0 attachments - 1 group
- Web services and exchange formats wiki
This wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardising access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualise a ...
Wiki Page - Administrator - 19 Jul 2011 - 08:46 - 0 comments - 0 attachments - 1 group
- Web Service Interfaces to LSDBs - Browser Point of View
Table of Contents [ hide ] Introduction Problems Required Operations Implementation Issues This post discusses web service interfaces to Locus Specific Databases (LSDBs), from the speci ...
Wiki Page - Glen Dobson - 25 Nov 2009 - 10:00 - 4 comments - 0 attachments - 1 group