Functional Prediction

New sequencing techniques has dramatically increased the data available for genomic research. Especially useful these new techniques (like re-sequencing) have been in mapping and detecting CNVs and other genome structural variants where they have made the difficult analysis more feasible and less error prone. Several computational methods have been developed which rely on these new technologies. In other study aspects, like predicting the disease susceptibility of missense mutations, effect of mutations affecting mRNA splicing and epistatic effects of several mutants, a different kind of need has rised. Increasing efforts have been dedicated to find the relevant, disease causing, mutations in the large amount of data available currently. This has led to the vast amount of new methods which aim to solve the problem of predicting which mutations have effect on disease risk. The purpose of the group is to provide concise information on pathogenicity prediction tools, methods and services.

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Protein level predictions 2 - Sequence alignment methods

None Päivi Rosenström

6th Oct 2009
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8th Mar 2010
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Protein level predictions 3 - Conservation analysis

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6th Oct 2009
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8th Mar 2010
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Protein level predictions 5 - Disorder prediction

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6th Oct 2009
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8th Mar 2010
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Protein level predictions 6 - Analysis of interatomic contacts

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6th Oct 2009
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8th Mar 2010
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Protein level predictions 7 - Aggregation prediction

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6th Oct 2009
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8th Mar 2010
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Protein level predictions 8 - Other tools predicting protein functional changes

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6th Oct 2009
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8th Mar 2010
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Prediction tools

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2nd Sep 2009
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8th Mar 2010
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Tools and methods for mapping genomic structural variation

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11th Sep 2009
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8th Mar 2010
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Meta tools

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11th Sep 2009
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8th Mar 2010
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Tools predicting protein level changes

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11th Sep 2009
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8th Mar 2010
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Tools considering epistatic effects

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11th Sep 2009
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8th Mar 2010
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Protein level predictions 1 - Pathogenic or not predictors

None Päivi Rosenström

6th Oct 2009
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8th Mar 2010
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Protein level predictions 4 - Stability changes prediction

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6th Oct 2009
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8th Mar 2010
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Tools predicting the overal functional consequences of SNPs

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2nd Dec 2009
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8th Mar 2010
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Tools predicting problems in mRNA splicing

None Päivi Rosenström

11th Sep 2009
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8th Mar 2010
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