Ontologies

Ontologies relevant to variation data

• Variation ontology - Variation Ontology, VariO, project aims at providing ontology for standardized, systematic description of effects and consequences of variations
• SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). The ontology can be used to assist study of inter-individual DNA variations in different drug responses
• TMO - This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together

Links related to ontologies and semantic web in general 

• Semantic Web in Gen2phen
• BOWiki - BOWiki is a collaborative editor for biomedical knowledge, gene functions and annotations;
• Open Biomedical Investigations (OBO Foundry)
• P3G Datashaper
• Semantic health
• Synthetic Biology: Semantic web ontoloy
• Semantic Web Applications and Tools for Life Sciences (Workshop)
• Semantic Web Health Care and Life Sciences (HCLS) Interest Group
• Interlinking Methodology in the LODD project
• Translational Medicine Ontology
• NeuroCommons (Scientific research materials in the Semantic Web)
• SADI Semantic web services (the paper)
• Bio2RDF
• A Semantic Web Primer for Object-Oriented Software Developers
• SEMANTIC WEB for the WORKING ONTOLOGIST
• Semantic web tools
• Semantic web tutorial using N3
• OWL overview and guide
• SemanticWeb.org