Skip to main content
GEN2PHEN Knowledge Centre logo
Login or use OpenID
Need an account? Contact us
GEN2PHEN logo
  • Home
  • News
  • Events
  • Community
  • Data
  • About GEN2PHEN
Home » Groups » Web services and exchange formats

Web services and exchange formats wiki

  • View
  • Revisions
Contributed by:Administrator
Originally posted:29th April 2009: 10:36 pm
Last updated:19th July 2011: 8:46 am
Short URL:http://gen2phen.org/node/1522
Interest group icon Web services and exchange formats
Public document Public - anyone can view
Tweet

This wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs.

Standardising access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualise and federate data can be achieved by having well-defined interfaces and consistent exchange formats. See the Use Cases wiki page for our consideration of what makes these issues important.

ARTICLES

  • The Spain report
  • DNA, diseases and databases: disastrously deficient
  • Sharing data between LSDBs and central repositories
  • Recommendations - Human Variome Project
  •  

STANDARDS

  • Standards related activities in gen2phen

USE CASES

  • LSDB data exchange use cases

CHECK LISTS AND VOCABULARIES

  • LSDB minimal requirements
  • LSDB check list. Workshop notes
  • LSDB controlled vocabulary terms
  • DMutDB check list
  • Other LSDB check lists
  • Data content (google) spreasheet made for the Leicester workshop (2011 May)

LSDB data format

  • Glen's inaugural post: Web Service Interfaces to LSDBs - Browser Point of View
  • Glen's notes on developing a prototype LOVD web service
  • Initial discussions on data format, naming scheme and VCF  (29.10-30.11.2009)
  • Entry point to data standards in gen2phen site
  • A initial LSDB object model and Molgenis implementation
  • LSDB xml data format wiki page and corresponding UML model

NMDB DATA FORMAT

  • NMDB xml data format wiki page

DATA INTEGRATION

  • RDFization of formats

Using the Web Services/Exchange Format

  • Visualisation of LOVD data in the NGRL Browser achieved using the REST API

Misc

  • XML Resources
  • Data formats source code (svn-repo)

Note to self: add links to various projects & slides we've been passing around in the initial E-mail discussion.

0
Your rating: None
  • Standards
  • LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format
  • LSDB Data Format
    • Web Service Interfaces to LSDBs - Browser Point of View
    • Developing Prototype LOVD web services at NGRL
    • Exchange format for LSDBs
  • Development of LOVD RESTful / Atom webservice
Standards ›
Tags:
  • WP3
  • WP4
  • WP6
  • WP7
  • Printer-friendly version
  • Login to post comments

Web services and exchange formats wiki

  • Standards
  • LSDB minimal requirements (D3.4), compared to LOVD and the LSDB XML format
  • LSDB Data Format
    • Web Service Interfaces to LSDBs - Browser Point of View
    • Developing Prototype LOVD web services at NGRL
    • Exchange format for LSDBs
  • Development of LOVD RESTful / Atom webservice
  • Group home
  • Wiki

Web services and exchange formats

  • You must register/login in order to post into this group.
G2P Knowledge Centre is part of GEN2PHEN and funded by the Health Thematic Area of the Cooperation Programme of the European Commission within the VII Framework Programme for Research and Technological Development.

© GEN2PHEN 2011
Follow @gen2phen
  • Contact Us