Functional Prediction
New sequencing techniques has dramatically increased the data available for genomic research. Especially useful these new techniques (like re-sequencing) have been in mapping and detecting CNVs and other genome structural variants where they have made the difficult analysis more feasible and less error prone. Several computational methods have been developed which rely on these new technologies. In other study aspects, like predicting the disease susceptibility of missense mutations, effect of mutations affecting mRNA splicing and epistatic effects of several mutants, a different kind of need has rised. Increasing efforts have been dedicated to find the relevant, disease causing, mutations in the large amount of data available currently. This has led to the vast amount of new methods which aim to solve the problem of predicting which mutations have effect on disease risk. The purpose of the group is to provide concise information on pathogenicity prediction tools, methods and services.
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Tools predicting the overal functional consequences of SNPsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 2nd Dec 2009 updated 12th Jul 2011 |
2nd Dec 2009 by Päivi Rosenström |
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Protein level predictions 1 - Pathogenic or not predictorsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 6th Oct 2010 |
6th Oct 2009 by Päivi Rosenström |
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Tools and methods for mapping genomic structural variationWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 11th Sep 2009 updated 6th Oct 2010 |
11th Sep 2009 by Päivi Rosenström |
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SNP identification and annotation toolsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 12th Apr 2010 updated 6th Oct 2010 |
12th Apr 2010 by Päivi Rosenström |
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Meta toolsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 11th Sep 2009 updated 29th Sep 2010 |
11th Sep 2009 by Päivi Rosenström |
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Protein level predictions 8 - Other tools predicting protein functional changesWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 28th Sep 2010 |
6th Oct 2009 by Päivi Rosenström |
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Tools predicting problems in mRNA splicingWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 11th Sep 2009 updated 22nd Sep 2010 |
11th Sep 2009 by Päivi Rosenström |
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Prediction toolsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 2nd Sep 2009 updated 22nd Sep 2010 |
2nd Sep 2009 by Päivi Rosenström |
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Tools considering epistatic effectsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 11th Sep 2009 updated 16th Sep 2010 |
11th Sep 2009 by Päivi Rosenström |
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Protein level predictions 4 - Stability changes predictionWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 19th Aug 2010 |
6th Oct 2009 by Päivi Rosenström |
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Protein level predictions 3 - Conservation analysisWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 12th Aug 2010 |
6th Oct 2009 by Päivi Rosenström |
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Protein level predictions 7 - Aggregation predictionWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 8th Mar 2010 |
6th Oct 2009 by Päivi Rosenström |
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Protein level predictions 5 - Disorder predictionWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 8th Mar 2010 |
6th Oct 2009 by Päivi Rosenström |
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Protein level predictions 6 - Analysis of interatomic contactsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 8th Mar 2010 |
6th Oct 2009 by Päivi Rosenström |
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Protein level predictions 2 - Sequence alignment methodsWiki Page |
Public - anyone can view |
None |
Päivi Rosenström posted 6th Oct 2009 updated 8th Mar 2010 |
6th Oct 2009 by Päivi Rosenström |
